Your bike looks real clean, a good platform to start with. Good luck with your project! Start a thread when you start working on herHi BlackBII. I've been lurking this thread for a few months, as the way your bike ended up is along the lines of what I'm thinking for my FJ600.
What I'm wondering right now is what you did with your stock upper triple tree when you mounted clip-ons. Were you able to find an upper triple that fit your forks?
I used the stock upper triple, my clips ons sit right below the triple, they don't interfere with eachother at all