why do u wanna rebuild it? is making weird noise, leaking, down on power? most "rebuilds" are done because something is wrong and needs fixing.
when we did the 08 1000rr rebuilds was because they were spinning bearings and some where gouging the crankshaft, so you open it which means all the gaskets, replace the crankshaft, replace bearings and plastic gauging them to check clearances which means ur taking the rods all apart again to measure those clearances, then put all back together again with the new gaskets, piston rings, pins, all the little pieces. also replaced all the rod bolts because theyre the stretching type and honda recommended replacing them. but that was because we already knew what needed done, if not, then u do everything mentioned except replacing the crank shaft while checking shit as u go along.
service manual and follow it.